Prioritization of potentially bioactive metabolic features from epidemiological and environmental metabolomics datasets

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Documentation for package ‘Macarron’ version 1.12.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

calAVA	Calculate abundance versus anchor (AVA) of metabolic features.
calES	Calculate effect size of differential abundance of metabolic features.
calQval	Calculate q-value of differential abundance of metabolic features.
decorateID	Create a chemical taxonomy table for annotated metabolic features.
findMacMod	Cluster metabolic features based on covarying abundances into modules
Macarron	Macarron
makeDisMat	Create a biweight midcorrelation (WGCNA::bicor()) based distance matrix.
prepInput	Create a SummarizedExperiment object
prioritize	Rank metabolic features and prioritize based on predicted bioactivity.
showBest	View highly prioritized bioactives grouped by modules.